I couldn't find a good list, so I made my own. I almost certainly am missing several Famicom games.
Advanced Dungeons & Dragons: Hillsfar
Advanced Dungeons & Dragons: Pool of Radiance
Advanced Dungeons & Dragons: Heroes of the Lance
Al Unser Jr. Turbo Racing
Bandit Kings of Ancient China
Bard's Tale, The
Bard's Tale II, The
Baseball Simulator 1.000
Baseball Stars
Baseball Stars 2
Base Wars: Cyber Stadium Series
Capcom's Gold Medal Challenge '92
Crystalis
Déjà Vu
Destiny of an Emperor
Dragon Warrior
Dragon Warrior II
Dragon Warrior III
Dragon Warrior IV
Dungeon Magic - Sword of the Elements
Earthbound (aka Mother)
Elite
Empereur'L
Faria - A World of Mystery & Danger!
Final Fantasy
Final Fantasy II
Final Fantasy III
Formula One: Built to Win
Gemfire
Genghis Khan
Ghost Lion, Legend of
Golf Power, Greg Norman's
Kirby's Adventure
Legend of Zelda, The
Magician
Maniac Mansion
Might & Magic: Secret of the Inner Sanctum
Nobunaga's Ambition
Nobunaga's Ambition II
NES Open Tournament Golf
Overlord
Pirates!
Racermate Challenge 2
Romance of the Three Kingdoms
Romance of the Three Kingdoms II
Shadowgate
Shingen the Ruler
Star Tropics
Tecmo NBA Basketball
Tecmo Super Bowl
Ultima - Exodus
Ultima: Quest of the Avatar
Ultima: Warriors of Destiny
Uncharted Waters
Uninvited
Wario's Woods
Willow
Wizardry - Knight of Diamonds
Wizardry - Proving Grounds of the Mad Overlord
Wizardry II
Wizardry III
Y's
Y's 2
Y's 3
Zelda II - The Adventure of Link
Zoda's Revenge Star Tropics II
Advanced Dungeons & Dragons: Hillsfar
Advanced Dungeons & Dragons: Pool of Radiance
Advanced Dungeons & Dragons: Heroes of the Lance
Al Unser Jr. Turbo Racing
Bandit Kings of Ancient China
Bard's Tale, The
Bard's Tale II, The
Baseball Simulator 1.000
Baseball Stars
Baseball Stars 2
Base Wars: Cyber Stadium Series
Capcom's Gold Medal Challenge '92
Crystalis
Déjà Vu
Destiny of an Emperor
Dragon Warrior
Dragon Warrior II
Dragon Warrior III
Dragon Warrior IV
Dungeon Magic - Sword of the Elements
Earthbound (aka Mother)
Elite
Empereur'L
Faria - A World of Mystery & Danger!
Final Fantasy
Final Fantasy II
Final Fantasy III
Formula One: Built to Win
Gemfire
Genghis Khan
Ghost Lion, Legend of
Golf Power, Greg Norman's
Kirby's Adventure
Legend of Zelda, The
Magician
Maniac Mansion
Might & Magic: Secret of the Inner Sanctum
Nobunaga's Ambition
Nobunaga's Ambition II
NES Open Tournament Golf
Overlord
Pirates!
Racermate Challenge 2
Romance of the Three Kingdoms
Romance of the Three Kingdoms II
Shadowgate
Shingen the Ruler
Star Tropics
Tecmo NBA Basketball
Tecmo Super Bowl
Ultima - Exodus
Ultima: Quest of the Avatar
Ultima: Warriors of Destiny
Uncharted Waters
Uninvited
Wario's Woods
Willow
Wizardry - Knight of Diamonds
Wizardry - Proving Grounds of the Mad Overlord
Wizardry II
Wizardry III
Y's
Y's 2
Y's 3
Zelda II - The Adventure of Link
Zoda's Revenge Star Tropics II